
R version 3.3.2 (2016-10-31) -- "Sincere Pumpkin Patch"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-alt-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> options (repos= c("http://ftp.eenet.ee/pub/cran", "https://files.kde.org/rkward/R/"))
> install.packages (c ("Rcmdr"), lib="/home/user/R")

also installing the dependencies ‘rematch’, ‘zoo’, ‘acepack’, ‘forcats’, ‘hms’, ‘readr’, ‘cellranger’, ‘SparseM’, ‘MatrixModels’, ‘minqa’, ‘nloptr’, ‘RcppEigen’, ‘sandwich’, ‘Hmisc’, ‘e1071’, ‘haven’, ‘readstata13’, ‘readxl’, ‘nortest’, ‘pbkrtest’, ‘quantreg’, ‘carData’, ‘lme4’, ‘survey’, ‘RcmdrMisc’, ‘car’, ‘effects’, ‘tcltk2’, ‘abind’, ‘relimp’

trying URL 'http://ftp.eenet.ee/pub/cran/src/contrib/rematch_1.0.1.tar.gz'
Content type 'application/x-gzip' length 3719 bytes
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downloaded 3719 bytes

trying URL 'http://ftp.eenet.ee/pub/cran/src/contrib/zoo_1.8-1.tar.gz'
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downloaded 832 KB

trying URL 'http://ftp.eenet.ee/pub/cran/src/contrib/acepack_1.4.1.tar.gz'
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trying URL 'http://ftp.eenet.ee/pub/cran/src/contrib/forcats_0.3.0.tar.gz'
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trying URL 'http://ftp.eenet.ee/pub/cran/src/contrib/hms_0.4.2.tar.gz'
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trying URL 'http://ftp.eenet.ee/pub/cran/src/contrib/readr_1.1.1.tar.gz'
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trying URL 'http://ftp.eenet.ee/pub/cran/src/contrib/cellranger_1.1.0.tar.gz'
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trying URL 'http://ftp.eenet.ee/pub/cran/src/contrib/SparseM_1.77.tar.gz'
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downloaded 738 KB

trying URL 'http://ftp.eenet.ee/pub/cran/src/contrib/MatrixModels_0.4-1.tar.gz'
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trying URL 'http://ftp.eenet.ee/pub/cran/src/contrib/minqa_1.2.4.tar.gz'
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trying URL 'http://ftp.eenet.ee/pub/cran/src/contrib/nloptr_1.0.4.tar.gz'
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trying URL 'http://ftp.eenet.ee/pub/cran/src/contrib/RcppEigen_0.3.3.4.0.tar.gz'
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trying URL 'http://ftp.eenet.ee/pub/cran/src/contrib/sandwich_2.4-0.tar.gz'
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trying URL 'http://ftp.eenet.ee/pub/cran/src/contrib/Hmisc_4.1-1.tar.gz'
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trying URL 'http://ftp.eenet.ee/pub/cran/src/contrib/e1071_1.6-8.tar.gz'
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trying URL 'http://ftp.eenet.ee/pub/cran/src/contrib/haven_1.1.1.tar.gz'
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trying URL 'http://ftp.eenet.ee/pub/cran/src/contrib/readstata13_0.9.0.tar.gz'
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trying URL 'http://ftp.eenet.ee/pub/cran/src/contrib/readxl_1.0.0.tar.gz'
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trying URL 'http://ftp.eenet.ee/pub/cran/src/contrib/nortest_1.0-4.tar.gz'
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trying URL 'http://ftp.eenet.ee/pub/cran/src/contrib/pbkrtest_0.4-7.tar.gz'
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trying URL 'http://ftp.eenet.ee/pub/cran/src/contrib/quantreg_5.35.tar.gz'
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trying URL 'http://ftp.eenet.ee/pub/cran/src/contrib/carData_3.0-0.tar.gz'
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trying URL 'http://ftp.eenet.ee/pub/cran/src/contrib/lme4_1.1-15.tar.gz'
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downloaded 3.4 MB

trying URL 'http://ftp.eenet.ee/pub/cran/src/contrib/survey_3.33-2.tar.gz'
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trying URL 'http://ftp.eenet.ee/pub/cran/src/contrib/RcmdrMisc_1.0-8.tar.gz'
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trying URL 'http://ftp.eenet.ee/pub/cran/src/contrib/car_2.1-6.tar.gz'
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trying URL 'http://ftp.eenet.ee/pub/cran/src/contrib/effects_4.0-0.tar.gz'
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trying URL 'http://ftp.eenet.ee/pub/cran/src/contrib/tcltk2_1.2-11.tar.gz'
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trying URL 'http://ftp.eenet.ee/pub/cran/src/contrib/abind_1.4-5.tar.gz'
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trying URL 'http://ftp.eenet.ee/pub/cran/src/contrib/relimp_1.0-5.tar.gz'
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trying URL 'http://ftp.eenet.ee/pub/cran/src/contrib/Rcmdr_2.4-2.tar.gz'
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* installing *source* package ‘rematch’ ...
** package ‘rematch’ successfully unpacked and MD5 sums checked
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices

  converting help for package ‘rematch’

    finding HTML links ... done

    re_match                                html  
Rd warning: /tmp/.private/user/RtmpDole4f/R.INSTALL11fd381d849e/rematch/man/re_match.Rd:29: missing file link ‘regexpr’
Rd warning: /tmp/.private/user/RtmpDole4f/R.INSTALL11fd381d849e/rematch/man/re_match.Rd:20: missing file link ‘regexpr’
    rematch                                 html  

** building package indices
** testing if installed package can be loaded
* DONE (rematch)
* installing *source* package ‘zoo’ ...
** package ‘zoo’ successfully unpacked and MD5 sums checked
** libs

x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG -I../inst/include -I/usr/local/include    -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c coredata.c -o coredata.o
x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG -I../inst/include -I/usr/local/include    -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c init.c -o init.o
x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG -I../inst/include -I/usr/local/include    -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c lag.c -o lag.o
x86_64-alt-linux-gcc -shared -L/usr/lib64/R/lib -L/usr/local/lib64 -o zoo.so coredata.o init.o lag.o -L/usr/lib64/R/lib -lR

installing to /home/user/R/zoo/libs
** R
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices

  converting help for package ‘zoo’

    finding HTML links ... done

    MATCH                                   html  
    ORDER                                   html  
    aggregate.zoo                           html  
    as.zoo                                  html  
    coredata                                html  
    frequency                               html  
    ggplot2.zoo                             html  
    index                                   html  
    is.regular                              html  
    lag.zoo                                 html  
    make.par.list                           html  
    merge.zoo                               html  
    na.StructTS                             html  
    na.aggregate                            html  
    na.approx                               html  
    na.fill                                 html  
    na.locf                                 html  
    na.trim                                 html  
    plot.zoo                                html  
    read.zoo                                html  
    rollapply                               html  
    rollmean                                html  
    window.zoo                              html  
    xblocks                                 html  
    xyplot.zoo                              html  
Rd warning: /tmp/.private/user/Rtmpix30dG/R.INSTALL120e4ede8e93/zoo/man/xyplot.zoo.Rd:120: missing file link ‘lpoints’
Rd warning: /tmp/.private/user/Rtmpix30dG/R.INSTALL120e4ede8e93/zoo/man/xyplot.zoo.Rd:121: missing file link ‘ltext’
    yearmon                                 html  
    yearqtr                                 html  
    zoo                                     html  
Rd warning: /tmp/.private/user/Rtmpix30dG/R.INSTALL120e4ede8e93/zoo/man/zoo.Rd:239: missing file link ‘c.POSIXct’
    zooreg                                  html  

** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (zoo)
* installing *source* package ‘acepack’ ...
** package ‘acepack’ successfully unpacked and MD5 sums checked
** libs

f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c ace.f -o ace.o
f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c avas.f -o avas.o
f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c rlsmo.f -o rlsmo.o
x86_64-alt-linux-gcc -shared -L/usr/lib64/R/lib -L/usr/local/lib64 -o acepack.so ace.o avas.o rlsmo.o -lgfortran -lm -lquadmath -L/usr/lib64/R/lib -lR

installing to /home/user/R/acepack/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices

  converting help for package ‘acepack’

    finding HTML links ... done

    ace                                     html  
    avas                                    html  

** building package indices
** testing if installed package can be loaded
* DONE (acepack)
* installing *source* package ‘forcats’ ...
** package ‘forcats’ successfully unpacked and MD5 sums checked
** R
** data
*** moving datasets to lazyload DB
** preparing package for lazy loading
** help
*** installing help indices

  converting help for package ‘forcats’

    finding HTML links ... done

    as_factor                               html  
    fct_anon                                html  
    fct_c                                   html  
    fct_collapse                            html  
    fct_count                               html  
    fct_drop                                html  
    fct_expand                              html  
    fct_explicit_na                         html  
    fct_inorder                             html  
    fct_lump                                html  
    fct_other                               html  
    fct_recode                              html  
    fct_relabel                             html  
    fct_relevel                             html  
    fct_reorder                             html  
    fct_rev                                 html  
    fct_shift                               html  
    fct_shuffle                             html  
    fct_unify                               html  
    fct_unique                              html  
    forcats-package                         html  
    gss_cat                                 html  
    lvls                                    html  
    lvls_union                              html  
    pipe                                    html  
Rd warning: /tmp/.private/user/RtmpXloVDs/R.INSTALL124c969bfb4/forcats/man/pipe.Rd:10: missing file link ‘%>%’

*** copying figures
** building package indices
** testing if installed package can be loaded
* DONE (forcats)
* installing *source* package ‘hms’ ...
** package ‘hms’ successfully unpacked and MD5 sums checked
** R
** preparing package for lazy loading
** help
*** installing help indices

  converting help for package ‘hms’

    finding HTML links ... done

    hms                                     html  
    parse_hms                               html  
    round_hms                               html  

** building package indices
** testing if installed package can be loaded
* DONE (hms)
* installing *source* package ‘SparseM’ ...
** package ‘SparseM’ successfully unpacked and MD5 sums checked
** libs

f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c bckslv.f -o bckslv.o

bckslv.f:55:5:

   100 continue
     1
Warning: Label 100 at (1) defined but not used
bckslv.f:126:5:

   100 continue
     1
Warning: Label 100 at (1) defined but not used
bckslv.f:185:5:

   100 continue
     1
Warning: Label 100 at (1) defined but not used
bckslv.f:2:65:

      &                   xlnz,invp,perm,xsuper,newrhs,sol,b,timed)
                                                                 1
Warning: Unused dummy argument ‘timed’ at (1) [-Wunused-dummy-argument]
bckslv.f:71:64:

      &                  xlnz,invp,perm,xsuper,newrhs,sol,b,timed)
                                                                1
Warning: Unused dummy argument ‘timed’ at (1) [-Wunused-dummy-argument]
bckslv.f:134:64:

      &                  xlnz,invp,perm,xsuper,newrhs,sol,b,timed)
                                                                1
Warning: Unused dummy argument ‘timed’ at (1) [-Wunused-dummy-argument]

f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c chol.f -o chol.o

chol.f:4:52:

      &                tmpvec,cachsz,level,ierr,timed)
                                                    1
Warning: Unused dummy argument ‘timed’ at (1) [-Wunused-dummy-argument]

f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c chol2csr.f -o chol2csr.o
f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c cholesky.f -o cholesky.o

f951: Warning: Nonconforming tab character in column 1 of line 560 [-Wtabs]
cholesky.f:1972:20:

             CACHE = ( FLOAT(CACHSZ) * 1024. / 8. ) * 0.9
                    1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
cholesky.f:5590:34:

      &                      NOFSUB, XLINDX, LINDX , XLNZ  , MRGLNK,
                                  1
Warning: Unused dummy argument ‘nofsub’ at (1) [-Wunused-dummy-argument]
cholesky.f:2271:49:

       SUBROUTINE  FSUP2  (  NEQNS , NSUPER, ETPAR , SNODE , XSUPER  )
                                                 1
Warning: Unused dummy argument ‘etpar’ at (1) [-Wunused-dummy-argument]
cholesky.f:1198:50:

       SUBROUTINE  CHORDR (  NEQNS , XADJ  , ADJNCY, PERM  , INVP  ,
                                                  1
Warning: Unused dummy argument ‘adjncy’ at (1) [-Wunused-dummy-argument]
cholesky.f:1198:40:

       SUBROUTINE  CHORDR (  NEQNS , XADJ  , ADJNCY, PERM  , INVP  ,
                                        1
Warning: Unused dummy argument ‘xadj’ at (1) [-Wunused-dummy-argument]
cholesky.f:3078:46:

       SUBROUTINE  MMDINT ( NEQNS, XADJ, ADJNCY, DHEAD, DFORW,
                                              1
Warning: Unused dummy argument ‘adjncy’ at (1) [-Wunused-dummy-argument]
cholesky.f:4810:62:

       SUBROUTINE  PCHOL  ( M, N, XPNT, X, MXDIAG, NTINY, IFLAG, SMXPY )
                                                              1
Warning: Unused dummy argument ‘iflag’ at (1) [-Wunused-dummy-argument]
cholesky.f:2575:33:

       SUBROUTINE  INPNV  (  NEQNS, XADJF, ADJF, ANZF, PERM, INVP,
                                 1
Warning: Unused dummy argument ‘neqns’ at (1) [-Wunused-dummy-argument]
cholesky.f:2777:57:

       SUBROUTINE  LSTATS (  NSUPER, XSUPER, XLINDX, LINDX , XLNZ  ,
                                                         1
Warning: Unused dummy argument ‘lindx’ at (1) [-Wunused-dummy-argument]
cholesky.f:2778:42:

      &                      TMPSIZ, OUTUNT                          )
                                          1
Warning: Unused dummy argument ‘outunt’ at (1) [-Wunused-dummy-argument]
cholesky.f:2778:34:

      &                      TMPSIZ, OUTUNT                          )
                                  1
Warning: Unused dummy argument ‘tmpsiz’ at (1) [-Wunused-dummy-argument]
cholesky.f:72:0:

             YOFF1 = IY1 - ICOL
 ^
Warning: ‘iy1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
cholesky.f:511:0:

                     NXTSUP = SNODE(NXTCOL)
 ^
Warning: ‘nxtcol’ may be used uninitialized in this function [-Wmaybe-uninitialized]

f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c csr.f -o csr.o

csr.f:33:26:

       subroutine nzero (ra,ja,ia,nrow,ncol,nnz,nz,rao,jao,iao,colmn)
                          1
Warning: Unused dummy argument ‘ra’ at (1) [-Wunused-dummy-argument]

f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c extract.f -o extract.o
x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include    -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c init.c -o init.o
f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c sparskit.f -o sparskit.o

f951: Warning: Nonconforming tab character in column 1 of line 589 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 590 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 608 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 609 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 627 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 628 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 646 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 647 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 929 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 930 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 931 [-Wtabs]
f951: Warning: Nonconforming tab character in column 5 of line 946 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 949 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 1038 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 1131 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 1592 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 1687 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 1808 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 1815 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 1818 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 1819 [-Wtabs]
sparskit.f:93:18:

  200     continue       
                  1
Warning: Nonconforming tab character at (1) [-Wtabs]
sparskit.f:98:15:

  100  continue   
               1
Warning: Nonconforming tab character at (1) [-Wtabs]
sparskit.f:239:10:

       tmp = ix(init) 
          1
Warning: Nonconforming tab character at (1) [-Wtabs]
sparskit.f:250:11:

       tmp1   = ix(ii) 
           1
Warning: Nonconforming tab character at (1) [-Wtabs]
sparskit.f:252:11:

       next   = perm(ii) 
           1
Warning: Nonconforming tab character at (1) [-Wtabs]
sparskit.f:271:10:

       tmp = ix(init)
          1
Warning: Nonconforming tab character at (1) [-Wtabs]
sparskit.f:272:9:

       ii = perm(init)
         1
Warning: Nonconforming tab character at (1) [-Wtabs]
sparskit.f:314:10:

       tmp = x(init) 
          1
Warning: Nonconforming tab character at (1) [-Wtabs]
sparskit.f:325:11:

       tmp1   = x(ii) 
           1
Warning: Nonconforming tab character at (1) [-Wtabs]
sparskit.f:327:11:

       next   = perm(ii) 
           1
Warning: Nonconforming tab character at (1) [-Wtabs]
sparskit.f:346:10:

       tmp = x(init)
          1
Warning: Nonconforming tab character at (1) [-Wtabs]
sparskit.f:347:9:

       ii = perm(init)
         1
Warning: Nonconforming tab character at (1) [-Wtabs]
sparskit.f:1820:18:

  3       continue    
                  1
Warning: Nonconforming tab character at (1) [-Wtabs]
sparskit.f:1873:18:

  3       continue    
                  1
Warning: Nonconforming tab character at (1) [-Wtabs]
sparskit.f:2014:15:

  6    k = k+1   
               1
Warning: Nonconforming tab character at (1) [-Wtabs]
sparskit.f:2314:13:

       return 
             1
Warning: Nonconforming tab character at (1) [-Wtabs]
sparskit.f:2459:3:

  72      iao(i) = kold+1
   1
Warning: Label 72 at (1) defined but not used
sparskit.f:2022:0:

       if (values) a(ipos)  = t
 ^
Warning: ‘tnext’ may be used uninitialized in this function [-Wmaybe-uninitialized]

f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c subscr.f -o subscr.o
x86_64-alt-linux-gcc -shared -L/usr/lib64/R/lib -L/usr/local/lib64 -o SparseM.so bckslv.o chol.o chol2csr.o cholesky.o csr.o extract.o init.o sparskit.o subscr.o -lgfortran -lm -lquadmath -L/usr/lib64/R/lib -lR

installing to /home/user/R/SparseM/libs
** R
** data
** demo
** inst
** preparing package for lazy loading
Creating a generic function for ‘diag’ from package ‘base’ in package ‘SparseM’
Creating a generic function for ‘diag<-’ from package ‘base’ in package ‘SparseM’
Creating a generic function for ‘norm’ from package ‘base’ in package ‘SparseM’
Creating a new generic function for ‘backsolve’ in package ‘SparseM’
Creating a generic function for ‘forwardsolve’ from package ‘base’ in package ‘SparseM’
Creating a generic function for ‘model.response’ from package ‘stats’ in package ‘SparseM’
** help
*** installing help indices

  converting help for package ‘SparseM’

    finding HTML links ... done

    SparseM.hb                              html  
    SparseM.image                           html  
    SparseM.ontology                        html  
    SparseM.ops                             html  
Rd warning: /tmp/.private/user/RtmpSXbfoF/R.INSTALL126e4a12e49d/SparseM/man/SparseM.ops.Rd:101: missing file link ‘determinant’
    SparseM.solve                           html  
    character-null-class                    html  
    lsq                                     html  
    matrix.coo-class                        html  
    matrix.csc-class                        html  
    matrix.csc.hb-class                     html  
    matrix.csr-class                        html  
    matrix.csr.chol-class                   html  
    matrix.ssc-class                        html  
    matrix.ssc.hb-class                     html  
    matrix.ssr-class                        html  
    mslm-class                              html  
    numeric-null-class                      html  
    slm-class                               html  
    slm                                     html  
    slm.fit                                 html  
    slm.methods                             html  
    summary.mslm-class                      html  
    summary.slm-class                       html  
    triogramX                               html  

** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (SparseM)
* installing *source* package ‘MatrixModels’ ...
** package ‘MatrixModels’ successfully unpacked and MD5 sums checked
** R
** preparing package for lazy loading
** help
*** installing help indices

  converting help for package ‘MatrixModels’

    finding HTML links ... done

    Model-class                             html  
    glm4                                    html  
    glpModel-class                          html  
    lm.fit.sparse                           html  
    mkRespMod                               html  
    model.Matrix                            html  
    modelMatrix-class                       html  
    predModule-class                        html  
    resid-et-al                             html  
    respModule-class                        html  
    reweightPred                            html  
    solveCoef                               html  
    updateMu                                html  
    updateWts                               html  

** building package indices
** testing if installed package can be loaded
* DONE (MatrixModels)
* installing *source* package ‘minqa’ ...
** package ‘minqa’ successfully unpacked and MD5 sums checked
** libs

f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c altmov.f -o altmov.o

altmov.f:273:0:

       IF (CSAVE .GT. CAUCHY) THEN
 ^
Warning: ‘csave’ may be used uninitialized in this function [-Wmaybe-uninitialized]
altmov.f:228:0:

           W(I)=-STEP*GLAG(I)
 ^
Warning: ‘step’ may be used uninitialized in this function [-Wmaybe-uninitialized]
altmov.f:174:0:

       IF (IBDSAV .GT. 0) XNEW(IBDSAV)=SU(IBDSAV)
 ^
Warning: ‘ibdsav’ may be used uninitialized in this function [-Wmaybe-uninitialized]
altmov.f:171:0:

       TEMP=XOPT(I)+STPSAV*(XPT(KSAV,I)-XOPT(I))
 ^
Warning: ‘stpsav’ may be used uninitialized in this function [-Wmaybe-uninitialized]
altmov.f:162:0:

           KSAV=K
 ^
Warning: ‘ksav’ may be used uninitialized in this function [-Wmaybe-uninitialized]

f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c bigden.f -o bigden.o
f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c biglag.f -o biglag.o

biglag.f:157:0:

           TEMPB=TEMPB-TAUMAX
 ^
Warning: ‘tempb’ may be used uninitialized in this function [-Wmaybe-uninitialized]

f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c bobyqa.f -o bobyqa.o
f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c bobyqb.f -o bobyqb.o

bobyqb.f:133:0:

           ERRBIG=DMAX1(DIFFA,DIFFB,DIFFC)
 ^
Warning: ‘diffc’ may be used uninitialized in this function [-Wmaybe-uninitialized]

f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c lagmax.f -o lagmax.o

lagmax.f:39:0:

           K=I
 ^
Warning: ‘k’ may be used uninitialized in this function [-Wmaybe-uninitialized]

x86_64-alt-linux-g++ -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include"   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c minqa.cpp -o minqa.o
f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c newuoa.f -o newuoa.o
f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c newuob.f -o newuob.o

newuob.f:193:0:

           SUM=SUM-HALF*XOPTSQ
 ^
Warning: ‘xoptsq’ may be used uninitialized in this function [-Wmaybe-uninitialized]
newuob.f:139:0:

           IF (XJPT .LT. ZERO) JPT=JPT+N
 ^
Warning: ‘xjpt’ may be used uninitialized in this function [-Wmaybe-uninitialized]
newuob.f:138:0:

           IF (XIPT .LT. ZERO) IPT=IPT+N
 ^
Warning: ‘xipt’ may be used uninitialized in this function [-Wmaybe-uninitialized]
newuob.f:451:0:

           IF (DABS(RATIO) .GT. 1.0D-2) THEN
 ^
Warning: ‘ratio’ may be used uninitialized in this function [-Wmaybe-uninitialized]
newuob.f:177:0:

           IF (NF .LE. NFSAV+2) GOTO 460
 ^
Warning: ‘nfsav’ may be used uninitialized in this function [-Wmaybe-uninitialized]
newuob.f:139:0:

           IF (XJPT .LT. ZERO) JPT=JPT+N
 ^
Warning: ‘jpt’ may be used uninitialized in this function [-Wmaybe-uninitialized]
newuob.f:467:0:

               ITEST=ITEST+1
 ^
Warning: ‘itest’ may be used uninitialized in this function [-Wmaybe-uninitialized]
newuob.f:137:0:

           IH=(IPT*(IPT-1))/2+JPT
 ^
Warning: ‘ipt’ may be used uninitialized in this function [-Wmaybe-uninitialized]
newuob.f:128:0:

               TEMP=(FBEG-F)/RHOBEG
 ^
Warning: ‘fbeg’ may be used uninitialized in this function [-Wmaybe-uninitialized]
newuob.f:387:0:

           DELTA=DMAX1(HALF*DELTA,DNORM+DNORM)
 ^
Warning: ‘dnorm’ may be used uninitialized in this function [-Wmaybe-uninitialized]
newuob.f:179:0:

           IF (TEMP .LE. DMAX1(DIFFA,DIFFB,DIFFC)) GOTO 460
 ^
Warning: ‘diffc’ may be used uninitialized in this function [-Wmaybe-uninitialized]
newuob.f:179:0: Warning: ‘diffa’ may be used uninitialized in this function [-Wmaybe-uninitialized]

f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c prelim.f -o prelim.o

prelim.f:122:0:

               DIFF=STEPB-STEPA
 ^
Warning: ‘stepb’ may be used uninitialized in this function [-Wmaybe-uninitialized]
prelim.f:122:0: Warning: ‘stepa’ may be used uninitialized in this function [-Wmaybe-uninitialized]
prelim.f:146:0:

           IH=(IPT*(IPT-1))/2+JPT
 ^
Warning: ‘jpt’ may be used uninitialized in this function [-Wmaybe-uninitialized]
prelim.f:146:0: Warning: ‘ipt’ may be used uninitialized in this function [-Wmaybe-uninitialized]
prelim.f:113:0:

               GOPT(NFM)=(F-FBEG)/STEPA
 ^
Warning: ‘fbeg’ may be used uninitialized in this function [-Wmaybe-uninitialized]

f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c rescue.f -o rescue.o

rescue.f:136:13:

           IW=(DFLOAT(K-NP)-HALF)/DFLOAT(N)
             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
rescue.f:210:13:

           IP=PTSID(K)
             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
rescue.f:212:13:

           IQ=DFLOAT(NP)*PTSID(K)-DFLOAT(IP*NP)
             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
rescue.f:301:9:

       IP=PTSID(KPT)
         1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
rescue.f:302:9:

       IQ=DFLOAT(NP)*PTSID(KPT)-DFLOAT(IP*NP)
         1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
rescue.f:368:13:

           IP=PTSID(K)
             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
rescue.f:369:13:

           IQ=DFLOAT(NP)*PTSID(K)-DFLOAT(IP*NP)
             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
rescue.f:325:0:

               VQUAD=VQUAD+XP*XQ*HQ(IW)
 ^
Warning: ‘xq’ may be used uninitialized in this function [-Wmaybe-uninitialized]

f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c trsapp.f -o trsapp.o

trsapp.f:162:0:

           TEMPB=TEMPB-QMIN
 ^
Warning: ‘tempb’ may be used uninitialized in this function [-Wmaybe-uninitialized]
trsapp.f:161:0:

           TEMPA=TEMPA-QMIN
 ^
Warning: ‘tempa’ may be used uninitialized in this function [-Wmaybe-uninitialized]
trsapp.f:137:0:

       CF=HALF*(SHS-DHD)
 ^
Warning: ‘shs’ may be used uninitialized in this function [-Wmaybe-uninitialized]
trsapp.f:171:0:

       REDUC=QBEG-(SG+CF*CTH)*CTH-(DG+DHS*CTH)*STH
 ^
Warning: ‘sg’ may be used uninitialized in this function [-Wmaybe-uninitialized]
trsapp.f:177:0:

       QRED=QRED+REDUC
 ^
Warning: ‘qred’ may be used uninitialized in this function [-Wmaybe-uninitialized]
trsapp.f:51:0:

       GGBEG=GG
 ^
Warning: ‘ggbeg’ may be used uninitialized in this function [-Wmaybe-uninitialized]
trsapp.f:70:0:

           ALPHA=DMIN1(ALPHA,GG/DHD)
 ^
Warning: ‘gg’ may be used uninitialized in this function [-Wmaybe-uninitialized]
trsapp.f:67:0:

           TEMP=DHD/DD
 ^
Warning: ‘dd’ may be used uninitialized in this function [-Wmaybe-uninitialized]
trsapp.f:72:0:

       QADD=ALPHA*(GG-HALF*ALPHA*DHD)
 ^
Warning: ‘bstep’ may be used uninitialized in this function [-Wmaybe-uninitialized]

f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c trsbox.f -o trsbox.o

trsbox.f:291:9:

       IU=17.0D0*ANGBD+3.1D0
         1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
trsbox.f:337:0:

           XBDI(IACT)=XSAV
 ^
Warning: ‘xsav’ may be used uninitialized in this function [-Wmaybe-uninitialized]
trsbox.f:225:0:

       SREDG=-TEMP
 ^
Warning: ‘sredg’ may be used uninitialized in this function [-Wmaybe-uninitialized]
trsbox.f:311:0:

           TEMP=(RDNEXT-RDPREV)/(REDMAX+REDMAX-RDPREV-RDNEXT)
 ^
Warning: ‘rdnext’ may be used uninitialized in this function [-Wmaybe-uninitialized]
trsbox.f:183:0:

           IF (ITERC .EQ. ITERMAX) GOTO 190
 ^
Warning: ‘itermax’ may be used uninitialized in this function [-Wmaybe-uninitialized]
trsbox.f:377:0:

       IF (ITERC .GT. ITCSAV) GOTO 150
 ^
Warning: ‘itcsav’ may be used uninitialized in this function [-Wmaybe-uninitialized]
trsbox.f:337:0:

           XBDI(IACT)=XSAV
 ^
Warning: ‘iact’ may be used uninitialized in this function [-Wmaybe-uninitialized]
trsbox.f:98:0:

       IF (GREDSQ*DELSQ .LE. 1.0D-4*QRED*QRED) GO TO 190
 ^
Warning: ‘gredsq’ may be used uninitialized in this function [-Wmaybe-uninitialized]
trsbox.f:185:0:

           BETA=GREDSQ/GGSAV
 ^
Warning: ‘ggsav’ may be used uninitialized in this function [-Wmaybe-uninitialized]
trsbox.f:215:0:

       TEMP=GREDSQ*DREDSQ-DREDG*DREDG
 ^
Warning: ‘dredsq’ may be used uninitialized in this function [-Wmaybe-uninitialized]
trsbox.f:215:0: Warning: ‘dredg’ may be used uninitialized in this function [-Wmaybe-uninitialized]
trsbox.f:291:0:

       IU=17.0D0*ANGBD+3.1D0
 ^
Warning: ‘angbd’ may be used uninitialized in this function [-Wmaybe-uninitialized]

f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c trstep.f -o trstep.o

trstep.f:348:0:

               IF (PIV(K)-TEMP .LT. TEMP-PIVKSV) THEN
 ^
Warning: ‘pivksv’ may be used uninitialized in this function [-Wmaybe-uninitialized]
trstep.f:260:0:

           IF (PARU .GT. ZERO) SLOPE=(PHIU-PHI)/(PARU-PAR)
 ^
Warning: ‘phiu’ may be used uninitialized in this function [-Wmaybe-uninitialized]
trstep.f:312:0:

           SLOPE=(PHI-PHIL)/(PAR-PARL)
 ^
Warning: ‘phil’ may be used uninitialized in this function [-Wmaybe-uninitialized]
trstep.f:201:0:

           SCALE=-DSIGN(DELTA/DSQRT(DSQ),DTG)
 ^
Warning: ‘dsq’ may be used uninitialized in this function [-Wmaybe-uninitialized]

f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c uobyqa.f -o uobyqa.o
f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c uobyqb.f -o uobyqb.o

uobyqb.f:394:0:

               IF (WMULT*VMAX .LE. ERRTOL) GOTO 310
 ^
Warning: ‘wmult’ may be used uninitialized in this function [-Wmaybe-uninitialized]
uobyqb.f:336:0:

       IF (DDKNEW .GT. TWORSQ) GOTO 70
 ^
Warning: ‘tworsq’ may be used uninitialized in this function [-Wmaybe-uninitialized]
uobyqb.f:253:0:

       SIXTHM=DMAX1(SIXTHM,DABS(DIFF)/SUM)
 ^
Warning: ‘sixthm’ may be used uninitialized in this function [-Wmaybe-uninitialized]
uobyqb.f:65:0:

           KOPT=NF
 ^
Warning: ‘kopt’ may be used uninitialized in this function [-Wmaybe-uninitialized]
uobyqb.f:168:0:

    70 KNEW=0
 ^
Warning: ‘knew’ may be used uninitialized in this function [-Wmaybe-uninitialized]
uobyqb.f:81:0:

           JSWITCH=-JSWITCH
 ^
Warning: ‘jswitch’ may be used uninitialized in this function [-Wmaybe-uninitialized]
uobyqb.f:138:0:

           IW=IQ+IQ
 ^
Warning: ‘iq’ may be used uninitialized in this function [-Wmaybe-uninitialized]
uobyqb.f:131:0:

           TEMP=ONE/(W(IP)*W(IQ))
 ^
Warning: ‘ip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
uobyqb.f:129:0:

       IH=IH+1
 ^
Warning: ‘ih’ may be used uninitialized in this function [-Wmaybe-uninitialized]
uobyqb.f:87:0:

                       PQ(J)=(FSAVE-F)/(TWO*RHO)
 ^
Warning: ‘fsave’ may be used uninitialized in this function [-Wmaybe-uninitialized]
uobyqb.f:86:0:

                       D(J)=(FSAVE+F-TWO*FBASE)/RHOSQ
 ^
Warning: ‘fbase’ may be used uninitialized in this function [-Wmaybe-uninitialized]
uobyqb.f:378:0:

           IF (ERRTOL .GT. ZERO) THEN
 ^
Warning: ‘errtol’ may be used uninitialized in this function [-Wmaybe-uninitialized]
uobyqb.f:283:0:

           DELTA=DMAX1(DELTA,1.25D0*DNORM,DNORM+RHO)
 ^
Warning: ‘dnorm’ may be used uninitialized in this function [-Wmaybe-uninitialized]
uobyqb.f:336:0:

       IF (DDKNEW .GT. TWORSQ) GOTO 70
 ^
Warning: ‘ddknew’ may be used uninitialized in this function [-Wmaybe-uninitialized]
uobyqb.f:84:0:

                   IH=IH+J
 ^
Warning: ‘j’ may be used uninitialized in this function [-Wmaybe-uninitialized]

f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c update.f -o update.o
f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c updatebobyqa.f -o updatebobyqa.o
x86_64-alt-linux-g++ -shared -L/usr/lib64/R/lib -L/usr/local/lib64 -o minqa.so altmov.o bigden.o biglag.o bobyqa.o bobyqb.o lagmax.o minqa.o newuoa.o newuob.o prelim.o rescue.o trsapp.o trsbox.o trstep.o uobyqa.o uobyqb.o update.o updatebobyqa.o -lgfortran -lm -lquadmath -L/usr/lib64/R/lib -lR

installing to /home/user/R/minqa/libs
** R
** preparing package for lazy loading
** help
*** installing help indices

  converting help for package ‘minqa’

    finding HTML links ... done

    bobyqa                                  html  
    newuoa                                  html  
    uobyqa                                  html  

** building package indices
** testing if installed package can be loaded
* DONE (minqa)
* installing *source* package ‘nloptr’ ...
** package ‘nloptr’ successfully unpacked and MD5 sums checked

checking for g++... g++
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking how to run the C++ preprocessor... g++ -E
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether g++ accepts -g... (cached) yes
checking for pkg-config... yes
configure: Now testing for NLopt header file.
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking nlopt.h usability... no
checking nlopt.h presence... no
checking for nlopt.h... no
configure: Need to download and build NLopt

trying URL 'http://ab-initio.mit.edu/nlopt/nlopt-2.4.2.tar.gz'
Error in download.file(url = "http://ab-initio.mit.edu/nlopt/nlopt-2.4.2.tar.gz",  : 
  cannot open URL 'http://ab-initio.mit.edu/nlopt/nlopt-2.4.2.tar.gz'
Execution halted
/usr/bin/gtar: This does not look like a tar archive

gzip: stdin: unexpected end of file
/usr/bin/gtar: Child returned status 1
/usr/bin/gtar: Error is not recoverable: exiting now
Warning message:
In untar(tarfile = "nlopt-2.4.2.tar.gz") :
  '/usr/bin/gtar -xf 'nlopt-2.4.2.tar.gz'' returned error code 2

configure: Starting to install library to /tmp/.private/user/Rtmp1rF0Ob/R.INSTALL131670a0ce92/nloptr/nlopt-2.4.2

./configure: line 3325: cd: nlopt-2.4.2: No such file or directory
isres/isres.c: No such file or directory
util/qsort_r.c: No such file or directory
util/qsort_r.c: No such file or directory

configure: Done installing library to /tmp/.private/user/Rtmp1rF0Ob/R.INSTALL131670a0ce92/nloptr/nlopt-2.4.2

sed: can't read confdefs.h: No such file or directory

configure: creating ./config.status

config.status: error: cannot find input file: `src/Makevars.in'
ERROR: configuration failed for package ‘nloptr’
* removing ‘/home/user/R/nloptr’
* installing *source* package ‘RcppEigen’ ...
** package ‘RcppEigen’ successfully unpacked and MD5 sums checked
** libs

x86_64-alt-linux-g++ -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include"  -I../inst/include -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c RcppEigen.cpp -o RcppEigen.o
x86_64-alt-linux-g++ -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include"  -I../inst/include -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c RcppExports.cpp -o RcppExports.o
x86_64-alt-linux-g++ -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include"  -I../inst/include -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c fastLm.cpp -o fastLm.o
x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include"   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c init.c -o init.o
x86_64-alt-linux-g++ -shared -L/usr/lib64/R/lib -L/usr/local/lib64 -o RcppEigen.so RcppEigen.o RcppExports.o fastLm.o init.o -llapack -lopenblas -lgfortran -lm -lquadmath -L/usr/lib64/R/lib -lR

installing to /home/user/R/RcppEigen/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices

  converting help for package ‘RcppEigen’

    finding HTML links ... done

    RcppEigen-package                       html  
    RcppEigen.package.skeleton              html  
    fastLm                                  html  

** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (RcppEigen)
* installing *source* package ‘e1071’ ...
** package ‘e1071’ successfully unpacked and MD5 sums checked

checking for C++ compiler default output file name... a.out
checking whether the C++ compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether x86_64-alt-linux-g++ accepts -g... yes

** libs

x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include    -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c Rsvm.c -o Rsvm.o
x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include    -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c cmeans.c -o cmeans.o
x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include    -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c cshell.c -o cshell.o
x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include    -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c floyd.c -o floyd.o
x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include    -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c init.c -o init.o
x86_64-alt-linux-g++ -I/usr/include/R -DNDEBUG  -I/usr/local/include    -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c svm.cpp -o svm.o

svm.cpp: In function ‘svm_model* svm_load_model(const char*)’:
svm.cpp:2788:24: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
   fscanf(fp,"%80s",cmd);
                        ^
svm.cpp:2792:25: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
    fscanf(fp,"%80s",cmd);
                         ^
svm.cpp:2817:25: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
    fscanf(fp,"%80s",cmd);
                         ^
svm.cpp:2841:33: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
    fscanf(fp,"%d",&param.degree);
                                 ^
svm.cpp:2843:33: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
    fscanf(fp,"%lf",&param.gamma);
                                 ^
svm.cpp:2845:33: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
    fscanf(fp,"%lf",&param.coef0);
                                 ^
svm.cpp:2847:36: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
    fscanf(fp,"%d",&model->nr_class);
                                    ^
svm.cpp:2849:29: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
    fscanf(fp,"%d",&model->l);
                             ^
svm.cpp:2855:36: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
     fscanf(fp,"%lf",&model->rho[i]);
                                    ^
svm.cpp:2862:37: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
     fscanf(fp,"%d",&model->label[i]);
                                     ^
svm.cpp:2869:38: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
     fscanf(fp,"%lf",&model->probA[i]);
                                      ^
svm.cpp:2876:38: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
     fscanf(fp,"%lf",&model->probB[i]);
                                      ^
svm.cpp:2883:35: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
     fscanf(fp,"%d",&model->nSV[i]);
                                   ^

x86_64-alt-linux-g++ -shared -L/usr/lib64/R/lib -L/usr/local/lib64 -o e1071.so Rsvm.o cmeans.o cshell.o floyd.o init.o svm.o -L/usr/lib64/R/lib -lR

installing to /home/user/R/e1071/libs
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** building package indices
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** package ‘readstata13’ successfully unpacked and MD5 sums checked
** libs

x86_64-alt-linux-g++ -I/usr/include/R -DNDEBUG -I../inst/include -I. -I/usr/local/include -I"/home/user/R/Rcpp/include"   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c RcppExports.cpp -o RcppExports.o
x86_64-alt-linux-g++ -I/usr/include/R -DNDEBUG -I../inst/include -I. -I/usr/local/include -I"/home/user/R/Rcpp/include"   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c rcpp_pre13_savestata.cpp -o rcpp_pre13_savestata.o
x86_64-alt-linux-g++ -I/usr/include/R -DNDEBUG -I../inst/include -I. -I/usr/local/include -I"/home/user/R/Rcpp/include"   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c rcpp_readstata.cpp -o rcpp_readstata.o
x86_64-alt-linux-g++ -I/usr/include/R -DNDEBUG -I../inst/include -I. -I/usr/local/include -I"/home/user/R/Rcpp/include"   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c rcpp_savestata.cpp -o rcpp_savestata.o
x86_64-alt-linux-g++ -I/usr/include/R -DNDEBUG -I../inst/include -I. -I/usr/local/include -I"/home/user/R/Rcpp/include"   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c read_dta.cpp -o read_dta.o
x86_64-alt-linux-g++ -I/usr/include/R -DNDEBUG -I../inst/include -I. -I/usr/local/include -I"/home/user/R/Rcpp/include"   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c read_pre13_dta.cpp -o read_pre13_dta.o
x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG -I../inst/include -I. -I/usr/local/include -I"/home/user/R/Rcpp/include"   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c register.c -o register.o
x86_64-alt-linux-g++ -shared -L/usr/lib64/R/lib -L/usr/local/lib64 -o readstata13.so RcppExports.o rcpp_pre13_savestata.o rcpp_readstata.o rcpp_savestata.o read_dta.o read_pre13_dta.o register.o -llapack -lopenblas -lgfortran -lm -lquadmath -L/usr/lib64/R/lib -lR

installing to /home/user/R/readstata13/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices

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** building package indices
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* DONE (readstata13)
* installing *source* package ‘nortest’ ...
** package ‘nortest’ successfully unpacked and MD5 sums checked
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** building package indices
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* DONE (nortest)
* installing *source* package ‘carData’ ...
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** building package indices
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* DONE (carData)
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** building package indices
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* installing *source* package ‘tcltk2’ ...
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** building package indices
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** building package indices
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** package ‘readr’ successfully unpacked and MD5 sums checked
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x86_64-alt-linux-g++ -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include" -I"/home/user/R/BH/include"   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c Collector.cpp -o Collector.o
x86_64-alt-linux-g++ -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include" -I"/home/user/R/BH/include"   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c CollectorGuess.cpp -o CollectorGuess.o
x86_64-alt-linux-g++ -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include" -I"/home/user/R/BH/include"   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c Iconv.cpp -o Iconv.o
x86_64-alt-linux-g++ -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include" -I"/home/user/R/BH/include"   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c LocaleInfo.cpp -o LocaleInfo.o
x86_64-alt-linux-g++ -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include" -I"/home/user/R/BH/include"   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c RcppExports.cpp -o RcppExports.o
x86_64-alt-linux-g++ -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include" -I"/home/user/R/BH/include"   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c Reader.cpp -o Reader.o
x86_64-alt-linux-g++ -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include" -I"/home/user/R/BH/include"   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c Source.cpp -o Source.o
x86_64-alt-linux-g++ -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include" -I"/home/user/R/BH/include"   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c Tokenizer.cpp -o Tokenizer.o
x86_64-alt-linux-g++ -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include" -I"/home/user/R/BH/include"   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c TokenizerDelim.cpp -o TokenizerDelim.o
x86_64-alt-linux-g++ -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include" -I"/home/user/R/BH/include"   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c TokenizerFwf.cpp -o TokenizerFwf.o
x86_64-alt-linux-g++ -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include" -I"/home/user/R/BH/include"   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c TokenizerWs.cpp -o TokenizerWs.o
x86_64-alt-linux-g++ -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include" -I"/home/user/R/BH/include"   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c connection.cpp -o connection.o
x86_64-alt-linux-g++ -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include" -I"/home/user/R/BH/include"   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c datetime.cpp -o datetime.o
x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include" -I"/home/user/R/BH/include"   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c grisu3.c -o grisu3.o
x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include" -I"/home/user/R/BH/include"   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c init.c -o init.o
x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include" -I"/home/user/R/BH/include"   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c localtime.c -o localtime.o
x86_64-alt-linux-g++ -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include" -I"/home/user/R/BH/include"   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c parse.cpp -o parse.o
x86_64-alt-linux-g++ -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include" -I"/home/user/R/BH/include"   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c read.cpp -o read.o
x86_64-alt-linux-g++ -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include" -I"/home/user/R/BH/include"   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c type_convert.cpp -o type_convert.o
x86_64-alt-linux-g++ -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include" -I"/home/user/R/BH/include"   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c write.cpp -o write.o
x86_64-alt-linux-g++ -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include" -I"/home/user/R/BH/include"   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c write_connection.cpp -o write_connection.o
x86_64-alt-linux-g++ -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include" -I"/home/user/R/BH/include"   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c write_delim.cpp -o write_delim.o
x86_64-alt-linux-g++ -shared -L/usr/lib64/R/lib -L/usr/local/lib64 -o readr.so Collector.o CollectorGuess.o Iconv.o LocaleInfo.o RcppExports.o Reader.o Source.o Tokenizer.o TokenizerDelim.o TokenizerFwf.o TokenizerWs.o connection.o datetime.o grisu3.o init.o localtime.o parse.o read.o type_convert.o write.o write_connection.o write_delim.o -L/usr/lib64/R/lib -lR

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** building package indices
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** libs

x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include    -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c Hmisc.c -o Hmisc.o
f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c cidxcn.f -o cidxcn.o

cidxcn.f:70:5:

 23003 continue
     1
Warning: Label 23003 at (1) defined but not used
cidxcn.f:77:5:

 23001 continue
     1
Warning: Label 23001 at (1) defined but not used

f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c cidxcp.f -o cidxcp.o

cidxcp.f:64:5:

 23003 continue
     1
Warning: Label 23003 at (1) defined but not used
cidxcp.f:71:5:

 23001 continue
     1
Warning: Label 23001 at (1) defined but not used

f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c hoeffd.f -o hoeffd.o

hoeffd.f:50:5:

 23017 continue
     1
Warning: Label 23017 at (1) defined but not used
hoeffd.f:52:5:

 23015 continue
     1
Warning: Label 23015 at (1) defined but not used
hoeffd.f:28:5:

 23009 continue
     1
Warning: Label 23009 at (1) defined but not used
hoeffd.f:39:5:

 23007 continue
     1
Warning: Label 23007 at (1) defined but not used
hoeffd.f:15:5:

 23003 continue
     1
Warning: Label 23003 at (1) defined but not used
hoeffd.f:41:5:

 23001 continue
     1
Warning: Label 23001 at (1) defined but not used
hoeffd.f:76:5:

 23019 continue
     1
Warning: Label 23019 at (1) defined but not used
hoeffd.f:113:5:

 23023 continue
     1
Warning: Label 23023 at (1) defined but not used
hoeffd.f:118:5:

 23021 continue
     1
Warning: Label 23021 at (1) defined but not used

x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include    -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c init.c -o init.o
f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c jacklins.f -o jacklins.o

jacklins.f:16:5:

 23005 continue
     1
Warning: Label 23005 at (1) defined but not used
jacklins.f:19:5:

 23003 continue
     1
Warning: Label 23003 at (1) defined but not used
jacklins.f:21:5:

 23001 continue
     1
Warning: Label 23001 at (1) defined but not used

f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c largrec.f -o largrec.o
x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include    -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c mChoice.c -o mChoice.o
f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c maxempr.f -o maxempr.o

maxempr.f:54:5:

 23015 continue
     1
Warning: Label 23015 at (1) defined but not used
maxempr.f:33:5:

 23005 continue
     1
Warning: Label 23005 at (1) defined but not used
maxempr.f:65:5:

 23001 continue
     1
Warning: Label 23001 at (1) defined but not used

x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include    -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c nstr.c -o nstr.o
x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include    -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c ranksort.c -o ranksort.o
f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c rcorr.f -o rcorr.o

rcorr.f:76:5:

 23023 continue
     1
Warning: Label 23023 at (1) defined but not used
rcorr.f:78:5:

 23021 continue
     1
Warning: Label 23021 at (1) defined but not used
rcorr.f:52:5:

 23011 continue
     1
Warning: Label 23011 at (1) defined but not used
rcorr.f:67:5:

 23007 continue
     1
Warning: Label 23007 at (1) defined but not used
rcorr.f:22:5:

 23003 continue
     1
Warning: Label 23003 at (1) defined but not used
rcorr.f:69:5:

 23001 continue
     1
Warning: Label 23001 at (1) defined but not used
rcorr.f:101:5:

 23025 continue
     1
Warning: Label 23025 at (1) defined but not used

x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include    -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c string_box.c -o string_box.o
f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c wclosest.f -o wclosest.o

wclosest.f:17:5:

 23003 continue
     1
Warning: Label 23003 at (1) defined but not used
wclosest.f:20:5:

 23001 continue
     1
Warning: Label 23001 at (1) defined but not used
wclosest.f:52:5:

 23013 continue
     1
Warning: Label 23013 at (1) defined but not used
wclosest.f:42:5:

 23011 continue
     1
Warning: Label 23011 at (1) defined but not used
wclosest.f:34:5:

 23009 continue
     1
Warning: Label 23009 at (1) defined but not used
wclosest.f:55:5:

 23007 continue
     1
Warning: Label 23007 at (1) defined but not used

x86_64-alt-linux-gcc -shared -L/usr/lib64/R/lib -L/usr/local/lib64 -o Hmisc.so Hmisc.o cidxcn.o cidxcp.o hoeffd.o init.o jacklins.o largrec.o mChoice.o maxempr.o nstr.o ranksort.o rcorr.o string_box.o wclosest.o -lgfortran -lm -lquadmath -L/usr/lib64/R/lib -lR

installing to /home/user/R/Hmisc/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices

  converting help for package ‘Hmisc’

    finding HTML links ... done

    Cs                                      html  
    Ecdf                                    html  
    GiniMd                                  html  
    Hmisc-internal                          html  
    Lag                                     html  
    Merge                                   html  
    Misc                                    html  
    Overview                                html  
    Save                                    html  
    abs.error.pred                          html  
    addMarginal                             html  
    all.is.numeric                          html  
    approxExtrap                            html  
    areg                                    html  
    aregImpute                              html  
    biVar                                   html  
    binconf                                 html  
    bootkm                                  html  
    bpower                                  html  
    bpplot                                  html  
    bystats                                 html  
    capitalize                              html  
    ciapower                                html  
    cnvrt.coords                            html  
    consolidate                             html  
    contents                                html  
    cpower                                  html  
    csv.get                                 html  
    curveRep                                html  
    cut2                                    html  
    data.frame.create.modify.check          html  
    dataRep                                 html  
    deff                                    html  
    describe                                html  
    discrete                                html  
    dotchart2                               html  
    dotchart3                               html  
    dotchartpl                              html  
    epi                                     html  
    equalBins                               html  
    errbar                                  html  
    escapeRegex                             html  
    event.chart                             html  
    event.convert                           html  
    event.history                           html  
    ffCompress                              html  
Rd warning: /tmp/.private/user/RtmpY45b98/R.INSTALLdfa4b006f2c/Hmisc/man/ffCompress.Rd:52: missing file link ‘cleanup.import’
    find.matches                            html  
    first.word                              html  
    format.df                               html  
    format.pval                             html  
    gbayes                                  html  
    getHdata                                html  
    getRs                                   html  
    getZip                                  html  
    ggMisc                                  html  
    ggfreqScatter                           html  
    hdquantile                              html  
    hist.data.frame                         html  
    histbackback                            html  
    histboxp                                html  
    hoeffd                                  html  
    html                                    html  
    impute                                  html  
    knitrSet                                html  
    labcurve                                html  
    label                                   html  
    latex                                   html  
    latexCheckOptions                       html  
    latexDotchart                           html  
    latexTabular                            html  
    latexTherm                              html  
    legendfunctions                         html  
    list.tree                               html  
    mApply                                  html  
    mChoice                                 html  
    makeNstr                                html  
    mdb.get                                 html  
    mgp.axis                                html  
    minor.tick                              html  
    mtitle                                  html  
    multLines                               html  
    na.delete                               html  
    na.detail.response                      html  
    na.keep                                 html  
    nin                                     html  
    nobsY                                   html  
    nstr                                    html  
    num.intercepts                          html  
    panel.bpplot                            html  
    partition                               html  
    pc1                                     html  
    plotCorrPrecision                       html  
    plsmo                                   html  
    popower                                 html  
    print.char.list                         html  
    print.char.matrix                       html  
    prnz                                    html  
    prselect                                html  
    pstamp                                  html  
    rMultinom                               html  
    rcorr                                   html  
    rcorr.cens                              html  
    rcorrp.cens                             html  
    rcspline.eval                           html  
    rcspline.plot                           html  
    rcspline.restate                        html  
    reShape                                 html  
    redun                                   html  
    rlegend                                 html  
    rm.boot                                 html  
    samplesize.bin                          html  
    sasxport.get                            html  
    scat1d                                  html  
    score.binary                            html  
    sedit                                   html  
    show.pch                                html  
    showPsfrag                              html  
    simRegOrd                               html  
    simplifyDims                            html  
    smean.sd                                html  
    solvet                                  html  
    somers2                                 html  
    spower                                  html  
    spss.get                                html  
    src                                     html  
    stat_plsmo                              html  
    stata.get                               html  
    string.bounding.box                     html  
    string.break.line                       html  
    stringDims                              html  
    subplot                                 html  
    summarize                               html  
    summary.formula                         html  
    summaryM                                html  
    summaryP                                html  
    summaryRc                               html  
    summaryS                                html  
Rd warning: /tmp/.private/user/RtmpY45b98/R.INSTALLdfa4b006f2c/Hmisc/man/summaryS.Rd:21: missing file link ‘dotplot’
    symbol.freq                             html  
    sys                                     html  
    t.test.cluster                          html  
    tabulr                                  html  
    tex                                     html  
    transace                                html  
    transcan                                html  
Rd warning: /tmp/.private/user/RtmpY45b98/R.INSTALLdfa4b006f2c/Hmisc/man/transcan.Rd:261: missing file link ‘lm.fit’
    translate                               html  
    trunc.POSIXt                            html  
    units                                   html  
    upData                                  html  
    upFirst                                 html  
    valueTags                               html  
    varclus                                 html  
    wtd.stats                               html  
    xYplot                                  html  
    xtfrm.labelled                          html  
    xy.group                                html  
    yearDays                                html  
    ynbind                                  html  
    sas.get                                 html  

** building package indices
** testing if installed package can be loaded
* DONE (Hmisc)
* installing *source* package ‘quantreg’ ...
** package ‘quantreg’ successfully unpacked and MD5 sums checked
** libs

f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c akj.f -o akj.o

akj.f:68:0:

                qrange = x(i) - qrange
 ^
Warning: ‘qrange’ may be used uninitialized in this function [-Wmaybe-uninitialized]
akj.f:139:0:

          dens(j)=con1*xker
 ^
Warning: ‘con1’ may be used uninitialized in this function [-Wmaybe-uninitialized]

f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c boot.f -o boot.o

boot.f:12:5:

 23001 continue
     1
Warning: Label 23001 at (1) defined but not used
boot.f:28:5:

 23007 continue
     1
Warning: Label 23007 at (1) defined but not used
boot.f:30:5:

 23005 continue
     1
Warning: Label 23005 at (1) defined but not used
boot.f:33:5:

 23003 continue
     1
Warning: Label 23003 at (1) defined but not used
boot.f:48:5:

 23013 continue
     1
Warning: Label 23013 at (1) defined but not used
boot.f:50:5:

 23011 continue
     1
Warning: Label 23011 at (1) defined but not used
boot.f:53:5:

 23009 continue
     1
Warning: Label 23009 at (1) defined but not used
boot.f:63:5:

 23017 continue
     1
Warning: Label 23017 at (1) defined but not used
boot.f:65:5:

 23015 continue
     1
Warning: Label 23015 at (1) defined but not used

f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c bound.f -o bound.o
f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c boundc.f -o boundc.o
f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c brute.f -o brute.o

brute.f:23:5:

 23007 continue
     1
Warning: Label 23007 at (1) defined but not used
brute.f:31:5:

 23001 continue
     1
Warning: Label 23001 at (1) defined but not used

f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c chlfct.f -o chlfct.o
f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c cholesky.f -o cholesky.o

f951: Warning: Nonconforming tab character in column 1 of line 560 [-Wtabs]
cholesky.f:1973:20:

             CACHE = ( FLOAT(CACHSZ) * 1024. / 8. ) * 0.9
                    1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
cholesky.f:5588:34:

      &                      NOFSUB, XLINDX, LINDX , XLNZ  , MRGLNK,
                                  1
Warning: Unused dummy argument ‘nofsub’ at (1) [-Wunused-dummy-argument]
cholesky.f:2272:49:

       SUBROUTINE  FSUP2  (  NEQNS , NSUPER, ETPAR , SNODE , XSUPER  )
                                                 1
Warning: Unused dummy argument ‘etpar’ at (1) [-Wunused-dummy-argument]
cholesky.f:1199:50:

       SUBROUTINE  CHORDR (  NEQNS , XADJ  , ADJNCY, PERM  , INVP  ,
                                                  1
Warning: Unused dummy argument ‘adjncy’ at (1) [-Wunused-dummy-argument]
cholesky.f:1199:40:

       SUBROUTINE  CHORDR (  NEQNS , XADJ  , ADJNCY, PERM  , INVP  ,
                                        1
Warning: Unused dummy argument ‘xadj’ at (1) [-Wunused-dummy-argument]
cholesky.f:3076:46:

       SUBROUTINE  MMDINT ( NEQNS, XADJ, ADJNCY, DHEAD, DFORW,
                                              1
Warning: Unused dummy argument ‘adjncy’ at (1) [-Wunused-dummy-argument]
cholesky.f:4808:62:

       SUBROUTINE  PCHOL  ( M, N, XPNT, X, MXDIAG, NTINY, IFLAG, SMXPY )
                                                              1
Warning: Unused dummy argument ‘iflag’ at (1) [-Wunused-dummy-argument]
cholesky.f:2573:33:

       SUBROUTINE  INPNV  (  NEQNS, XADJF, ADJF, ANZF, PERM, INVP,
                                 1
Warning: Unused dummy argument ‘neqns’ at (1) [-Wunused-dummy-argument]
cholesky.f:2775:57:

       SUBROUTINE  LSTATS (  NSUPER, XSUPER, XLINDX, LINDX , XLNZ  ,
                                                         1
Warning: Unused dummy argument ‘lindx’ at (1) [-Wunused-dummy-argument]
cholesky.f:2776:42:

      &                      TMPSIZ, OUTUNT                          )
                                          1
Warning: Unused dummy argument ‘outunt’ at (1) [-Wunused-dummy-argument]
cholesky.f:2776:34:

      &                      TMPSIZ, OUTUNT                          )
                                  1
Warning: Unused dummy argument ‘tmpsiz’ at (1) [-Wunused-dummy-argument]
cholesky.f:72:0:

             YOFF1 = IY1 - ICOL
 ^
Warning: ‘iy1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
cholesky.f:511:0:

                     NXTSUP = SNODE(NXTCOL)
 ^
Warning: ‘nxtcol’ may be used uninitialized in this function [-Wmaybe-uninitialized]

f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c combos.f -o combos.o

combos.f:72:5:

 23029 continue
     1
Warning: Label 23029 at (1) defined but not used
combos.f:76:5:

 23012 goto 23011
     1
Warning: Label 23012 at (1) defined but not used
combos.f:28:5:

 23008 continue
     1
Warning: Label 23008 at (1) defined but not used
combos.f:23:5:

 23001 goto 23000
     1
Warning: Label 23001 at (1) defined but not used

f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c crq.f -o crq.o

f951: Warning: Nonconforming tab character in column 2 of line 22 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 872 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 923 [-Wtabs]
crq.f:283:4:

  365  DO 380 I = (LSOL-1),N1
    1
Warning: Label 365 at (1) defined but not used
crq.f:263:4:

  315  CALL DGECO(XH,N,N,IA,V,WA)
    1
Warning: Label 315 at (1) defined but not used

f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c crqfnb.f -o crqfnb.o

crqfnb.f:22:5:

 23003 continue
     1
Warning: Label 23003 at (1) defined but not used

f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c dsel05.f -o dsel05.o

dsel05.f:65:14:

             s=cs*exp(2*z/3)+0.5d0
              1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
dsel05.f:66:15:

             sd=csd*sqrt(z*s*(1-s/dm))*sign(1d0,i-dm/2)+0.5d0
               1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
dsel05.f:75:14:

             l=max(dble(l),k-i*(s/dm)+sd)+0.5d0
              1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
dsel05.f:76:14:

             r=min(dble(r),k-i*(s/dm)+sd+s)+0.5d0
              1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]

f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c etime.f -o etime.o
f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c extract.f -o extract.o
f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c idmin.f -o idmin.o
x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include    -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c init.c -o init.o
f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c iswap.f -o iswap.o
f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c kuantile.f -o kuantile.o

kuantile.f:10:5:

 23001 continue
     1
Warning: Label 23001 at (1) defined but not used

x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include    -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c mcmb.c -o mcmb.o

mcmb.c: In function ‘func’:
mcmb.c:176:32: warning: variable ‘large’ set but not used [-Wunused-but-set-variable]
   double taustar, pwtsum, ans, large;
                                ^
mcmb.c:175:16: warning: variable ‘mm’ set but not used [-Wunused-but-set-variable]
   unsigned int mm;
                ^

f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c penalty.f -o penalty.o

penalty.f:41:5:

 23016 continue
     1
Warning: Label 23016 at (1) defined but not used
penalty.f:26:5:

 23010 continue
     1
Warning: Label 23010 at (1) defined but not used
penalty.f:50:5:

 23003 goto 23002
     1
Warning: Label 23003 at (1) defined but not used
penalty.f:53:5:

 23001 continue
     1
Warning: Label 23001 at (1) defined but not used
penalty.f:109:5:

 23031 continue
     1
Warning: Label 23031 at (1) defined but not used
penalty.f:73:0:

       n4(3) = iabs(v0)
 ^
Warning: ‘v0’ may be used uninitialized in this function [-Wmaybe-uninitialized]

f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c powell.f -o powell.o

powell.f:70:5:

 23026 continue
     1
Warning: Label 23026 at (1) defined but not used
powell.f:51:5:

 23016 continue
     1
Warning: Label 23016 at (1) defined but not used
powell.f:36:5:

 23010 continue
     1
Warning: Label 23010 at (1) defined but not used
powell.f:22:5:

 23008 continue
     1
Warning: Label 23008 at (1) defined but not used
powell.f:77:5:

 23001 goto 23000
     1
Warning: Label 23001 at (1) defined but not used
powell.f:114:5:

 23040 continue
     1
Warning: Label 23040 at (1) defined but not used
powell.f:116:5:

 23038 continue
     1
Warning: Label 23038 at (1) defined but not used
powell.f:127:5:

 23044 continue
     1
Warning: Label 23044 at (1) defined but not used
powell.f:142:5:

 23048 continue
     1
Warning: Label 23048 at (1) defined but not used

f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c rls.f -o rls.o
f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c rq0.f -o rq0.o

f951: Warning: Nonconforming tab character in column 2 of line 13 [-Wtabs]
f951: Warning: Nonconforming tab character in column 2 of line 14 [-Wtabs]
rq0.f:98:3:

  43   CONTINUE
   1
Warning: Label 43 at (1) defined but not used
rq0.f:100:13:

       S(I) = ZERO
             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
rq0.f:269:8:

       K=WA(I,N2)*SIGN(ONE,WA(I,N2))
        1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
rq0.f:274:10:

       K = WA(I,N2) * SIGN(ONE,WA(I,N2))
          1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
rq0.f:27:0:

       INTEGER N,N1,N2,OUT,S(M)
 ^
Warning: ‘out’ may be used uninitialized in this function [-Wmaybe-uninitialized]
rq0.f:150:0:

       IF(WA(M1,IN).GE.ZERO)GOTO 100
 ^
Warning: ‘in’ may be used uninitialized in this function [-Wmaybe-uninitialized]

f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c rq1.f -o rq1.o

f951: Warning: Nonconforming tab character in column 2 of line 14 [-Wtabs]
f951: Warning: Nonconforming tab character in column 2 of line 15 [-Wtabs]
rq1.f:100:3:

  43   CONTINUE
   1
Warning: Label 43 at (1) defined but not used
rq1.f:102:13:

       S(I) = ZERO
             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
rq1.f:271:8:

       K=WA(I,N2)*SIGN(ONE,WA(I,N2))
        1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
rq1.f:276:10:

       K = WA(I,N2) * SIGN(ONE,WA(I,N2))
          1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
rq1.f:28:0:

       INTEGER MDIM,N,N1,N2,OUT,S(MDIM)
 ^
Warning: ‘out’ may be used uninitialized in this function [-Wmaybe-uninitialized]
rq1.f:152:0:

       IF(WA(M1,IN).GE.ZERO)GOTO 100
 ^
Warning: ‘in’ may be used uninitialized in this function [-Wmaybe-uninitialized]

f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c rqbr.f -o rqbr.o

rqbr.f:567:5:

 23243 continue
     1
Warning: Label 23243 at (1) defined but not used
rqbr.f:527:5:

 23231 continue
     1
Warning: Label 23231 at (1) defined but not used
rqbr.f:514:5:

 23227 continue
     1
Warning: Label 23227 at (1) defined but not used
rqbr.f:517:5:

 23223 continue
     1
Warning: Label 23223 at (1) defined but not used
rqbr.f:506:5:

 23221 continue
     1
Warning: Label 23221 at (1) defined but not used
rqbr.f:481:5:

 23205 continue
     1
Warning: Label 23205 at (1) defined but not used
rqbr.f:462:5:

 23203 continue
     1
Warning: Label 23203 at (1) defined but not used
rqbr.f:458:5:

 23201 continue
     1
Warning: Label 23201 at (1) defined but not used
rqbr.f:432:5:

 23193 continue
     1
Warning: Label 23193 at (1) defined but not used
rqbr.f:425:5:

 23191 continue
     1
Warning: Label 23191 at (1) defined but not used
rqbr.f:375:5:

 23171 continue
     1
Warning: Label 23171 at (1) defined but not used
rqbr.f:393:5:

 23169 continue
     1
Warning: Label 23169 at (1) defined but not used
rqbr.f:361:5:

 23167 continue
     1
Warning: Label 23167 at (1) defined but not used
rqbr.f:348:5:

 23161 continue
     1
Warning: Label 23161 at (1) defined but not used
rqbr.f:341:5:

 23157 continue
     1
Warning: Label 23157 at (1) defined but not used
rqbr.f:336:5:

 23155 continue
     1
Warning: Label 23155 at (1) defined but not used
rqbr.f:327:5:

 23147 continue
     1
Warning: Label 23147 at (1) defined but not used
rqbr.f:317:5:

 23141 continue
     1
Warning: Label 23141 at (1) defined but not used
rqbr.f:303:5:

 23139 continue
     1
Warning: Label 23139 at (1) defined but not used
rqbr.f:294:5:

 23133 continue
     1
Warning: Label 23133 at (1) defined but not used
rqbr.f:277:5:

 23129 continue
     1
Warning: Label 23129 at (1) defined but not used
rqbr.f:272:5:

 23121 continue
     1
Warning: Label 23121 at (1) defined but not used
rqbr.f:258:5:

 23117 continue
     1
Warning: Label 23117 at (1) defined but not used
rqbr.f:243:5:

 23111 continue
     1
Warning: Label 23111 at (1) defined but not used
rqbr.f:234:5:

 23107 continue
     1
Warning: Label 23107 at (1) defined but not used
rqbr.f:237:5:

 23103 continue
     1
Warning: Label 23103 at (1) defined but not used
rqbr.f:225:5:

 23099 continue
     1
Warning: Label 23099 at (1) defined but not used
rqbr.f:217:5:

 23097 continue
     1
Warning: Label 23097 at (1) defined but not used
rqbr.f:208:5:

 23095 continue
     1
Warning: Label 23095 at (1) defined but not used
rqbr.f:187:5:

 23085 continue
     1
Warning: Label 23085 at (1) defined but not used
rqbr.f:210:5:

 23080 goto 23079
     1
Warning: Label 23080 at (1) defined but not used
rqbr.f:174:5:

 23076 continue
     1
Warning: Label 23076 at (1) defined but not used
rqbr.f:279:5:

 23073 goto 23072
     1
Warning: Label 23073 at (1) defined but not used
rqbr.f:159:5:

 23071 continue
     1
Warning: Label 23071 at (1) defined but not used
rqbr.f:151:5:

 23059 continue
     1
Warning: Label 23059 at (1) defined but not used
rqbr.f:281:5:

 23056 goto 23055
     1
Warning: Label 23056 at (1) defined but not used
rqbr.f:283:5:

 23053 goto 23052
     1
Warning: Label 23053 at (1) defined but not used
rqbr.f:127:5:

 23049 continue
     1
Warning: Label 23049 at (1) defined but not used
rqbr.f:491:5:

 23046 goto 23045
     1
Warning: Label 23046 at (1) defined but not used
rqbr.f:116:5:

 23044 continue
     1
Warning: Label 23044 at (1) defined but not used
rqbr.f:119:5:

 23042 continue
     1
Warning: Label 23042 at (1) defined but not used
rqbr.f:104:5:

 23038 continue
     1
Warning: Label 23038 at (1) defined but not used
rqbr.f:107:5:

 23036 continue
     1
Warning: Label 23036 at (1) defined but not used
rqbr.f:91:5:

 23034 continue
     1
Warning: Label 23034 at (1) defined but not used
rqbr.f:78:5:

 23022 continue
     1
Warning: Label 23022 at (1) defined but not used
rqbr.f:94:5:

 23020 continue
     1
Warning: Label 23020 at (1) defined but not used
rqbr.f:562:5:

 23017 goto 23016
     1
Warning: Label 23017 at (1) defined but not used
rqbr.f:54:5:

 23013 continue
     1
Warning: Label 23013 at (1) defined but not used
rqbr.f:50:5:

 23011 continue
     1
Warning: Label 23011 at (1) defined but not used
rqbr.f:300:10:

       k = wa(i,n4)*sign(one,wa(i,n4))
          1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
rqbr.f:306:11:

       kd = abs(wa(m4,i))-n
           1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
rqbr.f:319:11:

       kd = abs(wa(i,n4))-n
           1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
rqbr.f:357:10:

       k = wa(i,n4)*sign(one,wa(i,n4))
          1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
rqbr.f:365:10:

       k = wa(i,n4)*sign(one,wa(i,n4))-n
          1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
rqbr.f:456:13:

       s(i) = zero
             1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
rqbr.f:521:10:

       k = wa(i,n4)*sign(one,wa(i,n4))
          1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
rqbr.f:5:0:

       integer n,n1,n2,n3,nsol,ndsol,out,s(m),h(nn,nsol)
 ^
Warning: ‘out’ may be used uninitialized in this function [-Wmaybe-uninitialized]
rqbr.f:273:0:

       if(wa(m1,in).lt.zero)then
 ^
Warning: ‘in’ may be used uninitialized in this function [-Wmaybe-uninitialized]
rqbr.f:483:0:

       if(tnt.ge.t1+toler)then
 ^
Warning: ‘t1’ may be used uninitialized in this function [-Wmaybe-uninitialized]

f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c rqfn.f -o rqfn.o

rqfn.f:144:5:

 23031 continue
     1
Warning: Label 23031 at (1) defined but not used
rqfn.f:119:5:

 23029 continue
     1
Warning: Label 23029 at (1) defined but not used
rqfn.f:104:5:

 23017 continue
     1
Warning: Label 23017 at (1) defined but not used
rqfn.f:74:5:

 23013 continue
     1
Warning: Label 23013 at (1) defined but not used
rqfn.f:160:5:

 23011 continue
     1
Warning: Label 23011 at (1) defined but not used
rqfn.f:61:5:

 23007 continue
     1
Warning: Label 23007 at (1) defined but not used
rqfn.f:42:5:

 23005 continue
     1
Warning: Label 23005 at (1) defined but not used
rqfn.f:45:5:

 23003 continue
     1
Warning: Label 23003 at (1) defined but not used

f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c rqfnb.f -o rqfnb.o

rqfnb.f:130:5:

 23029 continue
     1
Warning: Label 23029 at (1) defined but not used
rqfnb.f:103:5:

 23027 continue
     1
Warning: Label 23027 at (1) defined but not used
rqfnb.f:90:5:

 23015 continue
     1
Warning: Label 23015 at (1) defined but not used
rqfnb.f:60:5:

 23011 continue
     1
Warning: Label 23011 at (1) defined but not used
rqfnb.f:142:5:

 23009 continue
     1
Warning: Label 23009 at (1) defined but not used
rqfnb.f:51:5:

 23005 continue
     1
Warning: Label 23005 at (1) defined but not used
rqfnb.f:34:5:

 23001 continue
     1
Warning: Label 23001 at (1) defined but not used
rqfnb.f:162:5:

 23043 continue
     1
Warning: Label 23043 at (1) defined but not used
rqfnb.f:156:5:

 23041 continue
     1
Warning: Label 23041 at (1) defined but not used
rqfnb.f:158:5:

 23039 continue
     1
Warning: Label 23039 at (1) defined but not used

f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c rqfnc.f -o rqfnc.o

rqfnc.f:186:5:

 23051 continue
     1
Warning: Label 23051 at (1) defined but not used
rqfnc.f:173:5:

 23041 continue
     1
Warning: Label 23041 at (1) defined but not used
rqfnc.f:145:5:

 23039 continue
     1
Warning: Label 23039 at (1) defined but not used
rqfnc.f:141:5:

 23037 continue
     1
Warning: Label 23037 at (1) defined but not used
rqfnc.f:124:5:

 23029 continue
     1
Warning: Label 23029 at (1) defined but not used
rqfnc.f:111:5:

 23019 continue
     1
Warning: Label 23019 at (1) defined but not used
rqfnc.f:82:5:

 23015 continue
     1
Warning: Label 23015 at (1) defined but not used
rqfnc.f:77:5:

 23013 continue
     1
Warning: Label 23013 at (1) defined but not used
rqfnc.f:200:5:

 23011 continue
     1
Warning: Label 23011 at (1) defined but not used
rqfnc.f:63:5:

 23007 continue
     1
Warning: Label 23007 at (1) defined but not used
rqfnc.f:46:5:

 23003 continue
     1
Warning: Label 23003 at (1) defined but not used
rqfnc.f:41:5:

 23001 continue
     1
Warning: Label 23001 at (1) defined but not used
rqfnc.f:224:5:

 23063 continue
     1
Warning: Label 23063 at (1) defined but not used
rqfnc.f:220:5:

 23061 continue
     1
Warning: Label 23061 at (1) defined but not used
rqfnc.f:214:5:

 23059 continue
     1
Warning: Label 23059 at (1) defined but not used
rqfnc.f:216:5:

 23057 continue
     1
Warning: Label 23057 at (1) defined but not used

f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c rqs.f -o rqs.o

rqs.f:9:5:

 23001 continue
     1
Warning: Label 23001 at (1) defined but not used

f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c sparskit2.f -o sparskit2.o

f951: Warning: Nonconforming tab character in column 1 of line 65 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 66 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 67 [-Wtabs]
f951: Warning: Nonconforming tab character in column 5 of line 82 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 85 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 273 [-Wtabs]
sparskit2.f:395:13:

       return 
             1
Warning: Nonconforming tab character at (1) [-Wtabs]

f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c srqfn.f -o srqfn.o

srqfn.f:33:67:

      &                split,tmpmax,tmpvec,newrhs,cachsz,level,x,s,u,
                                                                   1
Warning: Unused dummy argument ‘u’ at (1) [-Wunused-dummy-argument]

f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c srqfnc.f -o srqfnc.o

srqfnc.f:25:22:

       parameter (beta=9.995d-1, one=1.0d0, zero=0.0d0)
                      1
Warning: Change of value in conversion from  ‘REAL(8)’ to ‘REAL(4)’ at (1) [-Wconversion]
srqfnc.f:45:24:

      &                c1,c2,y,b,r2,z1,
                        1
Warning: Unused dummy argument ‘c1’ at (1) [-Wunused-dummy-argument]
srqfnc.f:44:69:

      &                tmpmax,tmpvec,rhs,newrhs,cachsz,level,x1,x2,s,u,
                                                                     1
Warning: Unused dummy argument ‘u’ at (1) [-Wunused-dummy-argument]

f95   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c srtpai.f -o srtpai.o

srtpai.f:50:34:

       SUBROUTINE I1SRT ( SA, SP, N )
                                  1
Warning: Unused dummy argument ‘n’ at (1) [-Wunused-dummy-argument]
srtpai.f:50:27:

       SUBROUTINE I1SRT ( SA, SP, N )
                           1
Warning: Unused dummy argument ‘sa’ at (1) [-Wunused-dummy-argument]
srtpai.f:50:31:

       SUBROUTINE I1SRT ( SA, SP, N )
                               1
Warning: Unused dummy argument ‘sp’ at (1) [-Wunused-dummy-argument]

x86_64-alt-linux-gcc -shared -L/usr/lib64/R/lib -L/usr/local/lib64 -o quantreg.so akj.o boot.o bound.o boundc.o brute.o chlfct.o cholesky.o combos.o crq.o crqfnb.o dsel05.o etime.o extract.o idmin.o init.o iswap.o kuantile.o mcmb.o penalty.o powell.o rls.o rq0.o rq1.o rqbr.o rqfn.o rqfnb.o rqfnc.o rqs.o sparskit2.o srqfn.o srqfnc.o srtpai.o -llapack -lopenblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/usr/lib64/R/lib -lR

installing to /home/user/R/quantreg/libs
** R
** data
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices

  converting help for package ‘quantreg’

    finding HTML links ... done

    Bosco                                   html  
    CobarOre                                html  
    FAQ                                     html  
    Mammals                                 html  
    Peirce                                  html  
    QTECox                                  html  
    akj                                     html  
    anova.rq                                html  
    bandwidth.rq                            html  
    barro                                   html  
    boot.crq                                html  
    boot.rq                                 html  
    combos                                  html  
    critval                                 html  
    crq                                     html  
    dither                                  html  
    dynrq                                   html  
    engel                                   html  
    gasprice                                html  
    khmaladzeTest                           html  
    kuantile                                html  
    latex                                   html  
    latex.summary.rqs                       html  
    latex.table                             html  
    lm.fit.recursive                        html  
    lprq                                    html  
    nlrq                                    html  
    nlrq.control                            html  
    plot.rq.process                         html  
    plot.rqs                                html  
    plot.rqss                               html  
    plot.summary.rqs                        html  
    predict.rq                              html  
    predict.rqss                            html  
    print.rq                                html  
    print.summary.rq                        html  
    qrisk                                   html  
    qss                                     html  
    ranks                                   html  
    rearrange                               html  
    residuals.nlrq                          html  
    rq                                      html  
    rq.fit                                  html  
    rq.fit.br                               html  
    rq.fit.fnb                              html  
    rq.fit.fnc                              html  
    rq.fit.hogg                             html  
    rq.fit.lasso                            html  
    rq.fit.pfn                              html  
    rq.fit.scad                             html  
    rq.fit.sfn                              html  
    rq.fit.sfnc                             html  
    rq.object                               html  
    rq.process.object                       html  
    rq.wfit                                 html  
    rqProcess                               html  
    rqs.fit                                 html  
    rqss                                    html  
    rqss.object                             html  
    sfn.control                             html  
    srisk                                   html  
    summary.crq                             html  
    summary.rq                              html  
    summary.rqss                            html  
    table.rq                                html  
    uis                                     html  

** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (quantreg)
ERROR: dependency ‘nloptr’ is not available for package ‘lme4’
* removing ‘/home/user/R/lme4’
* installing *source* package ‘haven’ ...
** package ‘haven’ successfully unpacked and MD5 sums checked
** libs

x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include"  -Ireadstat -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c tagged_na.c -o tagged_na.o
x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include"  -Ireadstat -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c readstat/readstat_parser.c -o readstat/readstat_parser.o
x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include"  -Ireadstat -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c readstat/readstat_bits.c -o readstat/readstat_bits.o
x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include"  -Ireadstat -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c readstat/readstat_io_unistd.c -o readstat/readstat_io_unistd.o
x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include"  -Ireadstat -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c readstat/readstat_variable.c -o readstat/readstat_variable.o
x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include"  -Ireadstat -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c readstat/readstat_writer.c -o readstat/readstat_writer.o
x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include"  -Ireadstat -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c readstat/readstat_error.c -o readstat/readstat_error.o
x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include"  -Ireadstat -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c readstat/readstat_convert.c -o readstat/readstat_convert.o
x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include"  -Ireadstat -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c readstat/CKHashTable.c -o readstat/CKHashTable.o
x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include"  -Ireadstat -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c readstat/readstat_malloc.c -o readstat/readstat_malloc.o
x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include"  -Ireadstat -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c readstat/readstat_value.c -o readstat/readstat_value.o
x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include"  -Ireadstat -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c readstat/sas/readstat_xport_write.c -o readstat/sas/readstat_xport_write.o
x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include"  -Ireadstat -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c readstat/sas/readstat_sas7bcat_read.c -o readstat/sas/readstat_sas7bcat_read.o
x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include"  -Ireadstat -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c readstat/sas/readstat_sas7bdat_write.c -o readstat/sas/readstat_sas7bdat_write.o
x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include"  -Ireadstat -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c readstat/sas/readstat_sas7bcat_write.c -o readstat/sas/readstat_sas7bcat_write.o
x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include"  -Ireadstat -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c readstat/sas/ieee.c -o readstat/sas/ieee.o
x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include"  -Ireadstat -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c readstat/sas/readstat_xport_read.c -o readstat/sas/readstat_xport_read.o
x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include"  -Ireadstat -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c readstat/sas/readstat_sas.c -o readstat/sas/readstat_sas.o
x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include"  -Ireadstat -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c readstat/sas/readstat_sas_rle.c -o readstat/sas/readstat_sas_rle.o
x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include"  -Ireadstat -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c readstat/sas/readstat_xport.c -o readstat/sas/readstat_xport.o
x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include"  -Ireadstat -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c readstat/sas/readstat_sas7bdat_read.c -o readstat/sas/readstat_sas7bdat_read.o
x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include"  -Ireadstat -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c readstat/spss/readstat_spss_parse.c -o readstat/spss/readstat_spss_parse.o
x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include"  -Ireadstat -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c readstat/spss/readstat_sav_read.c -o readstat/spss/readstat_sav_read.o
x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include"  -Ireadstat -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c readstat/spss/readstat_por_read.c -o readstat/spss/readstat_por_read.o
x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include"  -Ireadstat -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c readstat/spss/readstat_sav.c -o readstat/spss/readstat_sav.o
x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include"  -Ireadstat -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c readstat/spss/readstat_por.c -o readstat/spss/readstat_por.o
x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include"  -Ireadstat -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c readstat/spss/readstat_sav_parse_timestamp.c -o readstat/spss/readstat_sav_parse_timestamp.o
x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include"  -Ireadstat -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c readstat/spss/readstat_sav_write.c -o readstat/spss/readstat_sav_write.o
x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include"  -Ireadstat -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c readstat/spss/readstat_por_write.c -o readstat/spss/readstat_por_write.o
x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include"  -Ireadstat -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c readstat/spss/readstat_spss.c -o readstat/spss/readstat_spss.o
x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include"  -Ireadstat -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c readstat/spss/readstat_sav_parse.c -o readstat/spss/readstat_sav_parse.o
x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include"  -Ireadstat -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c readstat/spss/readstat_por_parse.c -o readstat/spss/readstat_por_parse.o
x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include"  -Ireadstat -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c readstat/stata/readstat_dta_read.c -o readstat/stata/readstat_dta_read.o
x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include"  -Ireadstat -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c readstat/stata/readstat_dta.c -o readstat/stata/readstat_dta.o
x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include"  -Ireadstat -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c readstat/stata/readstat_dta_parse_timestamp.c -o readstat/stata/readstat_dta_parse_timestamp.o
x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include"  -Ireadstat -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c readstat/stata/readstat_dta_write.c -o readstat/stata/readstat_dta_write.o
x86_64-alt-linux-g++ -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include"  -Ireadstat -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c DfReader.cpp -o DfReader.o
x86_64-alt-linux-g++ -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include"  -Ireadstat -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c DfWriter.cpp -o DfWriter.o
x86_64-alt-linux-g++ -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include"  -Ireadstat -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c haven_types.cpp -o haven_types.o
x86_64-alt-linux-g++ -I/usr/include/R -DNDEBUG  -I/usr/local/include -I"/home/user/R/Rcpp/include"  -Ireadstat -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c RcppExports.cpp -o RcppExports.o
x86_64-alt-linux-g++ -shared -L/usr/lib64/R/lib -L/usr/local/lib64 -o haven.so tagged_na.o readstat/readstat_parser.o readstat/readstat_bits.o readstat/readstat_io_unistd.o readstat/readstat_variable.o readstat/readstat_writer.o readstat/readstat_error.o readstat/readstat_convert.o readstat/CKHashTable.o readstat/readstat_malloc.o readstat/readstat_value.o readstat/sas/readstat_xport_write.o readstat/sas/readstat_sas7bcat_read.o readstat/sas/readstat_sas7bdat_write.o readstat/sas/readstat_sas7bcat_write.o readstat/sas/ieee.o readstat/sas/readstat_xport_read.o readstat/sas/readstat_sas.o readstat/sas/readstat_sas_rle.o readstat/sas/readstat_xport.o readstat/sas/readstat_sas7bdat_read.o readstat/spss/readstat_spss_parse.o readstat/spss/readstat_sav_read.o readstat/spss/readstat_por_read.o readstat/spss/readstat_sav.o readstat/spss/readstat_por.o readstat/spss/readstat_sav_parse_timestamp.o readstat/spss/readstat_sav_write.o readstat/spss/readstat_por_write.o readstat/spss/readstat_spss.o readstat/spss/readstat_sav_parse.o readstat/spss/readstat_por_parse.o readstat/stata/readstat_dta_read.o readstat/stata/readstat_dta.o readstat/stata/readstat_dta_parse_timestamp.o readstat/stata/readstat_dta_write.o DfReader.o DfWriter.o haven_types.o RcppExports.o -L/usr/lib64/R/lib -lR

installing to /home/user/R/haven/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices

  converting help for package ‘haven’

    finding HTML links ... done

    as_factor                               html  
    labelled                                html  
    labelled_spss                           html  
    print_labels                            html  
    read_dta                                html  
    read_sas                                html  
    read_spss                               html  
    read_xpt                                html  
    tagged_na                               html  
    zap_empty                               html  
    zap_formats                             html  
    zap_labels                              html  
    zap_missing                             html  
    zap_widths                              html  

*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (haven)
* installing *source* package ‘readxl’ ...
** package ‘readxl’ successfully unpacked and MD5 sums checked
** libs

x86_64-alt-linux-g++ -I/usr/include/R -DNDEBUG -Iunix -I. -I/usr/local/include -I"/home/user/R/Rcpp/include"   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c RcppExports.cpp -o RcppExports.o
x86_64-alt-linux-g++ -I/usr/include/R -DNDEBUG -Iunix -I. -I/usr/local/include -I"/home/user/R/Rcpp/include"   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c XlsWorkBook.cpp -o XlsWorkBook.o
x86_64-alt-linux-g++ -I/usr/include/R -DNDEBUG -Iunix -I. -I/usr/local/include -I"/home/user/R/Rcpp/include"   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c XlsWorkSheet.cpp -o XlsWorkSheet.o
x86_64-alt-linux-g++ -I/usr/include/R -DNDEBUG -Iunix -I. -I/usr/local/include -I"/home/user/R/Rcpp/include"   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c XlsxWorkBook.cpp -o XlsxWorkBook.o
x86_64-alt-linux-g++ -I/usr/include/R -DNDEBUG -Iunix -I. -I/usr/local/include -I"/home/user/R/Rcpp/include"   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c XlsxWorkSheet.cpp -o XlsxWorkSheet.o
x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG -Iunix -I. -I/usr/local/include -I"/home/user/R/Rcpp/include"   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c endian.c -o endian.o
x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG -Iunix -I. -I/usr/local/include -I"/home/user/R/Rcpp/include"   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c init.c -o init.o
x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG -Iunix -I. -I/usr/local/include -I"/home/user/R/Rcpp/include"   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c ole.c -o ole.o

ole.c: In function ‘ole2_open’:
ole.c:297:5: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
     fread(oleh,1,512,ole->file);
     ^
ole.c:412:6: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
      fread(wptr,1,ole->lsector,ole->file);
      ^
ole.c: In function ‘read_MSAT’:
ole.c:547:4: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
    fread(wptr,1,ole2->lsector,ole2->file);
    ^

x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG -Iunix -I. -I/usr/local/include -I"/home/user/R/Rcpp/include"   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c xls.c -o xls.o
x86_64-alt-linux-gcc -I/usr/include/R -DNDEBUG -Iunix -I. -I/usr/local/include -I"/home/user/R/Rcpp/include"   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c xlstool.c -o xlstool.o

xlstool.c: In function ‘xls_getfcell’:
xlstool.c:643:9: warning: ignoring return value of ‘asprintf’, declared with attribute warn_unused_result [-Wunused-result]
         asprintf(&ret,"%s",pWB->sst.string[xlsIntVal(*(DWORD_UA *)label)].str);
         ^
xlstool.c:647:9: warning: ignoring return value of ‘asprintf’, declared with attribute warn_unused_result [-Wunused-result]
         asprintf(&ret, "%s", "");
         ^
xlstool.c:653:4: warning: ignoring return value of ‘asprintf’, declared with attribute warn_unused_result [-Wunused-result]
    asprintf(&ret,"%.*s", len, (char *)label);
    ^
xlstool.c:665:9: warning: ignoring return value of ‘asprintf’, declared with attribute warn_unused_result [-Wunused-result]
         asprintf(&ret,"%lf", cell->d);
         ^
xlstool.c:673:13: warning: ignoring return value of ‘asprintf’, declared with attribute warn_unused_result [-Wunused-result]
             asprintf(&ret,"%d",(int)cell->d);
             ^
xlstool.c:676:13: warning: ignoring return value of ‘asprintf’, declared with attribute warn_unused_result [-Wunused-result]
             asprintf(&ret,"%d",(int)cell->d);
             ^
xlstool.c:679:13: warning: ignoring return value of ‘asprintf’, declared with attribute warn_unused_result [-Wunused-result]
             asprintf(&ret,"%.1f",cell->d);
             ^
xlstool.c:682:13: warning: ignoring return value of ‘asprintf’, declared with attribute warn_unused_result [-Wunused-result]
             asprintf(&ret,"%d",(int)cell->d);
             ^
xlstool.c:685:13: warning: ignoring return value of ‘asprintf’, declared with attribute warn_unused_result [-Wunused-result]
             asprintf(&ret,"%.2f",cell->d);
             ^
xlstool.c:688:13: warning: ignoring return value of ‘asprintf’, declared with attribute warn_unused_result [-Wunused-result]
             asprintf(&ret,"%.1e",cell->d);
             ^
xlstool.c:692:4: warning: ignoring return value of ‘asprintf’, declared with attribute warn_unused_result [-Wunused-result]
    asprintf(&ret,"%.0f",cell->d);
    ^
xlstool.c:696:13: warning: ignoring return value of ‘asprintf’, declared with attribute warn_unused_result [-Wunused-result]
             asprintf(&ret,"%.2f",cell->d);
             ^

x86_64-alt-linux-g++ -I/usr/include/R -DNDEBUG -Iunix -I. -I/usr/local/include -I"/home/user/R/Rcpp/include"   -fpic  -pipe -Wall -g -O2 -fno-strict-aliasing  -c zip.cpp -o zip.o
x86_64-alt-linux-g++ -shared -L/usr/lib64/R/lib -L/usr/local/lib64 -o readxl.so RcppExports.o XlsWorkBook.o XlsWorkSheet.o XlsxWorkBook.o XlsxWorkSheet.o endian.o init.o ole.o xls.o xlstool.o zip.o -L/usr/lib64/R/lib -lR

installing to /home/user/R/readxl/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices

  converting help for package ‘readxl’

    finding HTML links ... done

    cell-specification                      html  

    finding level-2 HTML links ... done


    excel_sheets                            html  
    read_excel                              html  
    readxl-package                          html  
    readxl_example                          html  

** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (readxl)
ERROR: dependency ‘lme4’ is not available for package ‘pbkrtest’
* removing ‘/home/user/R/pbkrtest’
ERROR: dependency ‘lme4’ is not available for package ‘effects’
* removing ‘/home/user/R/effects’
ERROR: dependency ‘pbkrtest’ is not available for package ‘car’
* removing ‘/home/user/R/car’
ERROR: dependency ‘car’ is not available for package ‘RcmdrMisc’
* removing ‘/home/user/R/RcmdrMisc’
ERROR: dependencies ‘RcmdrMisc’, ‘car’, ‘effects’ are not available for package ‘Rcmdr’
* removing ‘/home/user/R/Rcmdr’

The downloaded source packages are in
	‘/tmp/.private/user/RtmpV3RaZX/downloaded_packages’

> q ()

Warning messages:
1: In install.packages(c("Rcmdr"), lib = "/home/user/R") :
  installation of package ‘nloptr’ had non-zero exit status
2: In install.packages(c("Rcmdr"), lib = "/home/user/R") :
  installation of package ‘lme4’ had non-zero exit status
3: In install.packages(c("Rcmdr"), lib = "/home/user/R") :
  installation of package ‘pbkrtest’ had non-zero exit status
4: In install.packages(c("Rcmdr"), lib = "/home/user/R") :
  installation of package ‘effects’ had non-zero exit status
5: In install.packages(c("Rcmdr"), lib = "/home/user/R") :
  installation of package ‘car’ had non-zero exit status
6: In install.packages(c("Rcmdr"), lib = "/home/user/R") :
  installation of package ‘RcmdrMisc’ had non-zero exit status
7: In install.packages(c("Rcmdr"), lib = "/home/user/R") :
  installation of package ‘Rcmdr’ had non-zero exit status
